PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

482404

Common Name

ARALYDRAFT_482404

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 173aa MW: 19724.3 Da PI: 6.7872

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
482404	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.8e-19	12	57	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y 482404 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.02	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-26	1	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-32	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 NLDSVAERFM REYDDSDSGD EKESGNNRPK LKRMSEHLDL LNQEIEAEKN RGETDQEKLE 120 SAGDERFKNS IETLTLDELN EYKDKLQTVH GRIECQVNHM QASSCLMLLS RK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-15	1	75	1	74	MEF2C
5f28_B	1e-15	1	75	1	74	MEF2C
5f28_C	1e-15	1	75	1	74	MEF2C
5f28_D	1e-15	1	75	1	74	MEF2C
6byy_A	1e-15	1	69	1	69	MEF2 CHIMERA
6byy_B	1e-15	1	69	1	69	MEF2 CHIMERA
6byy_C	1e-15	1	69	1	69	MEF2 CHIMERA
6byy_D	1e-15	1	69	1	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	482404

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004077	0.0	AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence.
GenBank	AC004481	0.0	AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882747.1	1e-124	agamous-like MADS-box protein AGL29
Swissprot	O64703	1e-115	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	D7LH07	1e-124	D7LH07_ARALL; MADS-box family protein
STRING	fgenesh2_kg.4__1464__AT2G34440.1	1e-125	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-108	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	482404
Entrez Gene	9315566

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]