PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

482514

Common Name

ARALYDRAFT_482514

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

BBR-BPC

Protein Properties

Length: 227aa MW: 24771.5 Da PI: 10.8333

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
482514	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	265.8	2.3e-81	28	226	94	301
GAGA_bind 94 alpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192 + +++ ++++t+ id +q ++a++ + +++l +p+++++++++++k+k+ +q++ k ++++ +kk+ ++s+k++k+ s +++k+ekk 482514 28 HWLHSCIAVPKTTGIDLSQA-------NPAEGvMVPQSHLFPPPTRDSRNDMETVKQKSVNQSPLKSLKPNPPRKKR--SASNKSKKTLSI-PETKREKK 117 34456777778888876666.......455556899999******************999999999888887777..667667666665.799* PP GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292 ++d++++ s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+ R+agrKmS+ga+ klL++La+eGy+ls+pvDLk+hWA+H 482514 118 NLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPRVRLAGRKMSNGAYVKLLARLAGEGYNLSHPVDLKNHWARH 217 ************************************************************************************************ PP GAGA_bind 293 Gtnkfvtir 301 Gtnkfvti+ 482514 218 GTNKFVTIK 226 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.7E-104	1	226	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.8E-68	64	226	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MNSFPSQNLM LSATNANKGA GLRTSNAHWL HSCIAVPKTT GIDLSQANPA EGVMVPQSHL 60 FPPPTRDSRN DMETVKQKSV NQSPLKSLKP NPPRKKRSAS NKSKKTLSIP ETKREKKNLD 120 INIDISSFDT SGVPPPVCSC TGVSRVCYKW GMGGWQSSCC TISISTYPLP MSTTRPRVRL 180 AGRKMSNGAY VKLLARLAGE GYNLSHPVDL KNHWARHGTN KFVTIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	482514

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU089961	0.0	EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885696.1	1e-168	protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-154	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	D7LHX4	1e-167	D7LHX4_ARALL; GAGA-binding transcriptional activator
STRING	fgenesh2_kg.4__1574__AT2G35550.4	1e-167	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-147	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	482514
Entrez Gene	9315624