PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482683
Common NameARALYDRAFT_482683
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 185aa    MW: 19936.7 Da    PI: 7.0287
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482683genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.5e-34411376108
     TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasal 108
              r++++hTkv+gR RRv ++a++aar+F+L++eLG+++d++tieWLl qa+p+i+++tg+++++ s++  ++ + s      ++ + +a+ + ++q+s++++l
  482683  41 ARSKDRHTKVEGRSRRVMMPALVAARIFQLTRELGHKTDGETIEWLLSQAEPSIIAATGSGTKPISNSVGVAAVDS------SSPMMFAMMQTQTQESPSCTL 137
             599*********************************************************9999866622222222......234556666666666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2742119IPR005333Transcription factor, TCP
PROSITE profilePS5136925.6394397IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MIFQKLCTNE SNLNAIASKS RFQTQIGVSK SSFGGCGRIS ARSKDRHTKV EGRSRRVMMP  60
ALVAARIFQL TRELGHKTDG ETIEWLLSQA EPSIIAATGS GTKPISNSVG VAAVDSSSPM  120
MFAMMQTQTQ ESPSCTLDLC QPIGTQYPVN GYSHMPFTAM LLQPMTTAAD SDVEIAAEEE  180
PHHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMap482683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069221e-162AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence.
GenBankBT0107001e-162BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankBT0115041e-162BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankCP0026851e-162CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883892.11e-136transcription factor TCP11
SwissprotQ9SJK75e-77TCP11_ARATH; Transcription factor TCP11
TrEMBLD7LJA41e-135D7LJA4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1743__AT2G37000.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-79TCP family protein