PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483567
Common NameARALYDRAFT_483567
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 652aa    MW: 72539.5 Da    PI: 8.7973
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483567genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-1247100248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      + W t+E++ll++avk++G g+W+++a ++           ++++c++++++++
           483567  47 QTWGTWEELLLACAVKRHGFGDWDSVATEVRsrsslshILASANDCRHKYRDLK 100
                      68*********************************999559**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.05141100IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-541102IPR009057Homeodomain-like
SMARTSM007174.0E-845102IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-645104IPR009057Homeodomain-like
PfamPF002496.1E-1347100IPR001005SANT/Myb domain
CDDcd001678.91E-848100No hitNo description
SuperFamilySSF473701.44E-17299409IPR001487Bromodomain
SMARTSM002979.6E-23303412IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-16305442IPR001487Bromodomain
CDDcd043691.99E-16317407No hitNo description
PfamPF004391.7E-12317392IPR001487Bromodomain
PROSITE profilePS5001412.871322385IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSKEEEEEAR SYNMNVDDTN TNKYICTDND YIEEHEDDNN SKKSQAQTWG TWEELLLACA  60
VKRHGFGDWD SVATEVRSRS SLSHILASAN DCRHKYRDLK RRFQDQAKTD AAATATVEEE  120
EEERVGNNIP WLEQLRNLRV AELRREVERY DCSILSLQLK VKKLEEEREV GEEKPDLEDE  180
RKGERSENDG SESEHHGKAV VSAVEESDRE NRSMNESNST ETVGEDERVG GDEPSQTRDD  240
DSGNDNNNPD PDPVYNDAAA AVEEEEGSVS RGSEASHSDE LGESGTSETK WKRKRRKQGG  300
SGDIRSAESK SQPLIGLLDL IRSHPRGSLF ERRLRSQEAK DYKSMIKQHL DIETIQRKLK  360
QGSYDSSSIT FYRDLQLLFT NAIVFFPLSS SESMAAHELR AIVSQEIRKD TGKAGPRLIN  420
REASGMRSGK ADAETSDSSL SRQKSSATLV VCKKRSSVSA KASPSSSSFS QKEETKEETL  480
SEEKDNTVTG VRSSRRANKV VAGAAVVTNN TKTGKGKNKQ KQTESKTNSL NDNSSKQDTS  540
KTEKKTVSSD KKKSVADFLK RLKKNSPQKE AKDQNKSGGN GKKDSKTKPR ELRSSSVGKT  600
KAEVENTPVK RAPGRPQKKT AESTASASGK RGRDTGSTGK DNKQPKKRIR K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap483567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207070.0AY120707.1 Arabidopsis thaliana unknown protein (At2g44430) mRNA, complete cds.
GenBankBT0096640.0BT009664.1 Arabidopsis thaliana At2g44430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884818.10.0titin homolog
TrEMBLD7LLL40.0D7LLL4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2627__AT2G44430.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein