PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483619
Common NameARALYDRAFT_483619
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 316aa    MW: 34547.6 Da    PI: 9.6043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483619genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18161215256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
    483619 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 215
               788899***********************************************98 PP
2HD-ZIP_I/II123.69.4e-40161250191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
       483619 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDSLTEENRRLQKEVSELR-AL 250
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.7E-331123IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.4E-19142215IPR009057Homeodomain-like
SuperFamilySSF466891.8E-18147218IPR009057Homeodomain-like
PROSITE profilePS5007117.232157217IPR001356Homeobox domain
SMARTSM003894.8E-15159221IPR001356Homeobox domain
CDDcd000862.64E-14161218No hitNo description
PfamPF000468.9E-16161215IPR001356Homeobox domain
PROSITE patternPS000270192215IPR017970Homeobox, conserved site
PfamPF021831.1E-11217251IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.8E-27217260IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009725Biological Processresponse to hormone
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSFQ HMHNQNNNSH PQKIHHNSWT  60
HLFQSSGIKR TTAERNSDAG SFLRGFNVSR APSAVAVVDL EEEAAVVSSP NSTVSSLSGN  120
KRDLAVARGG DENEAERASC SRGGGSGGSD DEEGGNGDGS RKKLRLSKEQ ALVLEETFKE  180
HSTLNPKQKL ALAKQLNLRA RQVEVWFQNR RARTKLKQTE VDCEYLKRCC DSLTEENRRL  240
QKEVSELRAL KLSPHLYMHM TPPTTLTMCP SCERVSSSAA TVTAAPPTTP TVVGRPSPQR  300
LTPWTTISLQ QKSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165SRKKLRL
2209217RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483619
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412510.0AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881989.10.0homeobox-leucine zipper protein ATHB-4
SwissprotP929530.0ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLD7LBT70.0D7LBT7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2679__AT2G44910.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-135homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]