PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483651
Common NameARALYDRAFT_483651
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 624aa    MW: 68335.7 Da    PI: 5.5451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483651genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.84.4e-902626242368
    GRAS   2 velLlecAeavss..gdle......laqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
             +e+L+++Ae + +  + ++      laq +Larl+++   s++++p+qR+a++++eAL + +++      +a pp  t ++n + ++aa++ fse+sP+l+f 
  483651 262 IEQLFNAAELIGTtgN-NNngdhtvLAQGILARLNHHlnTSNHKSPFQRAASHIAEALLSLIHN------DASPPLIT-PENLILRIAAYRSFSETSPFLQFV 356
             5678888888765431.222444469**********98788889*******************9......55555555.589********************* PP

    GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
             ++taNq I e+ +++  +r+HiiDfd+++G+QW +L+q+La    R++ + sl++T++++p s+  ++ el+ t+e+L+ fA e+++pfe+++l  + l +  
  483651 357 NFTANQSIIESCNESgfDRIHIIDFDVGYGGQWSSLMQELApggRRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTFAGEVKIPFEIELLSIELLLNPA 459
             ************99988************************8866779999*********9988899***************************888888889 PP

    GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
             ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a+   ++++++++Er++++
  483651 460 YWPLSLRSseKEAIAVNLPVNSVASG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTSLLESLDAN---QNQDDSSIERFWVQ 551
             9999888777*********9666654........5677************************************************...89************ PP

    GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
             ++i++++++++++     e+   Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++ slv++W++++Lv
  483651 552 PSIEKLLMKRHRW----IERSPPWRSLFTQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELV 624
             *************....89999****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.898242610IPR005202Transcription factor GRAS
PfamPF035141.5E-87262624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLSSSF YSDSPKIWSN QDKTEGKQDL GYVVGGLLPE PTSVLDALRS  60
PSPLASYSST TTTLSSSHGG GTTVTNTTVT AGDDNNNKCS QMGLDDLDGV LSASSPGQEQ  120
SILRLIMDPG SGFGVFDPGF GFGSGSGPVP VSENSNPLCS FPFQEIATPA EALINPTNHC  180
LFSNPPLSPP AKRFNSGSLH QPVFPFSDPD PGHDPVRRQH QFPFPFQFHH NQQQQMPSSS  240
AAVAIVPVPS PGMAGDDQSV IIEQLFNAAE LIGTTGNNNN GDHTVLAQGI LARLNHHLNT  300
SNHKSPFQRA ASHIAEALLS LIHNDASPPL ITPENLILRI AAYRSFSETS PFLQFVNFTA  360
NQSIIESCNE SGFDRIHIID FDVGYGGQWS SLMQELAPGG RRRNRASSLK LTVFAPPPST  420
VSDEFELRFT EENLKTFAGE VKIPFEIELL SIELLLNPAY WPLSLRSSEK EAIAVNLPVN  480
SVASGYLPLI LRFLKQISPN VVVCSDRGCD RNDAPFPNAV IHALQYHTSL LESLDANQNQ  540
DDSSIERFWV QPSIEKLLMK RHRWIERSPP WRSLFTQCGF SPASLSQTAE AQAECLLQRN  600
PVRGFHVEKR QSSLVMCWQR KELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2430062433369GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537600.0BT053760.1 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884494.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLD7LBW20.0D7LBW2_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.4__2711__AT2G45160.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]