PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483704
Common NameARALYDRAFT_483704
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 357aa    MW: 37581.6 Da    PI: 10.0734
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483704genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.91.2e-3669156288
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
             + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tg+++ +a ++  +++ +  + ++  +
  483704  69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGSGTVPAIAMsVNGTLKIPTTTNADS 156
             57999***********************************************************888885543122222222211111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3074151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATIQKQEEV GGKDQSLRAV DLTIVHGVRN VETSRPFQVN STVSLEPKAE PVMPSISMSL  60
APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE  120
NAEPAIIAAT GSGTVPAIAM SVNGTLKIPT TTNADSDLGE NPMKKKRKRP SNSEYIDISD  180
AVSASSGLAP ISTTTTIQPP PALASSTVAQ QLLPQGMYPM WAIPSNAVIP TVGAFFLVPQ  240
IAGPSNQPQL LAFPAAAPSP SSYVAAVQQA SSMARPLPLQ VFPSSGFVSV SDVSGSNLSR  300
TTSVMAPSSS SGITTGGSSS TATTTTHTLR DFSLEIYEKQ ELHQFMSTTT TRSSNH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap483704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036800.0AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence.
GenBankAF3706060.0AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds.
GenBankAK2215990.0AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23.
GenBankAY0562140.0AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankAY1139810.0AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885215.10.0transcription factor TCP9
SwissprotO646470.0TCP9_ARATH; Transcription factor TCP9
TrEMBLD7LD720.0D7LD72_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2764__AT2G45680.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.10.0TCP family protein