PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483854
Common NameARALYDRAFT_483854
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 312aa    MW: 34958.6 Da    PI: 6.5918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483854genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.3e-3236141199
             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefelvvkv 96 
             f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  ++ +l++ +
  483854  36 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgRDSRLFIDW 138
             89****************************66677899*************************************************4433324677788888 PP

             E-S CS
      B3  97 frk 99 
             +r+
  483854 139 RRR 141
             876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-4128143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-3033128IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-2534136No hitNo description
PfamPF023625.9E-2936141IPR003340B3 DNA binding domain
SMARTSM010199.5E-2336142IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74836142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTDLSLTRDE DEEEEAKPLE EEGAGTREVA EREHMFDKVV TPSDVGKLNR LVIPKQHAER  60
FFPLDSSSNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS  120
FQRCVGDSGR DSRLFIDWRR RPKVPDHPHF AAGAMFPRFY SFPSTSYNLY NHQQQRHHHG  180
GGYNYHQIPR EFGYGYFVRS VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL  240
RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGGASS SSFFQLRLGS SSEDDHFTKK  300
GKSSLSFDLD Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-80291441116B3 domain-containing transcription factor NGA1
5os9_B5e-80291441116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN4288550.0FN428855.1 Arabidopsis halleri subsp. halleri partial BAC clone 7G24 containing mtp1-A1 and mtp-A2 genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872500.10.0B3 domain-containing transcription factor NGA1
RefseqXP_020885656.10.0B3 domain-containing transcription factor NGA1
SwissprotO827990.0NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLD7LF950.0D7LF95_ARALL; Uncharacterized protein
TrEMBLD7MWS00.0D7MWS0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.181__3__AT2G46870.10.0(Arabidopsis lyrata)
STRINGfgenesh2_kg.4__2914__AT2G46870.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-168B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]