PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

483964

Common Name

ARALYDRAFT_483964

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 152aa MW: 17439.6 Da PI: 7.3014

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
483964	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.9	7.2e-54	42	137	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP nak+sk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+ +lk+yl++yr legek 483964 42 KEQDRLLPIANVGRIMKNILPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYATQLKKYLHRYRVLEGEK 137 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.7E-52	34	144	IPR009072	Histone-fold
SuperFamily	SSF47113	1.34E-39	44	148	IPR009072	Histone-fold
Pfam	PF00808	8.7E-28	47	111	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-18	75	93	No hit	No description
PROSITE pattern	PS00685	0	78	94	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-18	94	112	No hit	No description
PRINTS	PR00615	4.4E-18	113	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MDSFQNPIPR YQNYNFASSS SHHQHQHVVV EDQQQEESMM IKEQDRLLPI ANVGRIMKNI 60 LPPNAKVSKE AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA MANLGFDDYA 120 TQLKKYLHRY RVLEGEKPNH HHGKGGPKSS PD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-44	41	131	1	91	Transcription factor HapC (Eurofung)
4g92_B	5e-44	41	131	1	91	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	483964

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005309	1e-180	AC005309.3 Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence.
GenBank	BT003968	1e-180	BT003968.1 Arabidopsis thaliana clone RAFL15-27-K05 (R20859) putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBank	BT005081	1e-180	BT005081.1 Arabidopsis thaliana clone U20859 putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBank	CP002685	1e-180	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_182302.1	1e-102	nuclear factor Y, subunit B5
Swissprot	O82248	1e-103	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	D7LHC5	1e-112	D7LHC5_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.4__3024__AT2G47810.1	1e-112	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-88	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	483964
Entrez Gene	9316392

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]