PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484068
Common NameARALYDRAFT_484068
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 276aa    MW: 31535.8 Da    PI: 6.3501
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484068genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.9e-2160118356
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
               +R+++t+eq++ Leel+ + +r+p++e+++++A+kl    +++ ++V++WFqN++a+e+
    484068  60 SRWNPTPEQITMLEELYMSgTRTPTTEHIQQIASKLrkygRIEGKNVFYWFQNHKARER 118
               7*****************99*************************************98 PP
2Wus_type_Homeobox113.88.9e-3758120264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a++RW+PtpeQi++Leely sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRer k
             484068  58 ATSRWNPTPEQITMLEELYMSGTRTPTTEHIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120
                        689**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.09455120IPR001356Homeobox domain
SMARTSM003891.2E-557124IPR001356Homeobox domain
SuperFamilySSF466896.42E-1259119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-860118IPR009057Homeodomain-like
PfamPF000466.1E-1960118IPR001356Homeobox domain
CDDcd000862.91E-561118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGYISNNNLI NYLPLSTTQP PLLLPHYCDI NGNDHHQLIT ASSGELDDDR KNNIPATATS  60
RWNPTPEQIT MLEELYMSGT RTPTTEHIQQ IASKLRKYGR IEGKNVFYWF QNHKARERLK  120
RRRCEGGALN KPHKDVKDSS SGGYRVDQTK SCPSLPHTNP QPQHELDPAS NNKDNNAKNE  180
DHGTAEESVR ASEDGKDATW RNLVTWSITQ EPAGEINIDQ NVNGEGQEET REIRTLDLFP  240
VRENHEETGR FTEKTKANQV FCNYCYYYEF MPLKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap484068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0858320.0AY085832.1 Arabidopsis thaliana clone 18820 mRNA, complete sequence.
GenBankAY2513990.0AY251399.2 Arabidopsis thaliana WOX6 protein mRNA, complete cds.
GenBankAY8852220.0AY885222.1 Arabidopsis thaliana pretty few seeds 2 (PFS2) mRNA, complete cds.
GenBankDQ4464510.0DQ446451.1 Arabidopsis thaliana clone pENTR221-At2g01500 homeobox-leucine zipper transcription factor family protein (At2g01500) mRNA, complete cds.
GenBankDQ6529450.0DQ652945.1 Arabidopsis thaliana clone 0000012888_0000009296 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880920.10.0WUSCHEL-related homeobox 6
SwissprotQ9ZVF51e-155WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLD7LLR90.0D7LLR9_ARALL; HOS9/PFS2
STRINGfgenesh2_kg.5__60__AT2G01500.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-146WOX family protein