PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484115
Common NameARALYDRAFT_484115
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 281aa    MW: 31330.8 Da    PI: 10.2865
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind361.51.7e-11012801301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllvenslas 93 
                mdddg+  rn+gyyepa as+k nlglqlms+i +r++k+    re+nl ++++++++++r+  m++    +++++      ++dnk++++l++++    
     484115   1 MDDDGF--RNWGYYEPAaASFKGNLGLQLMSTI-DRNTKPflpgRESNL-MIGSNGSYHPREhdMNY----SWISQ------PKDNKFFNMLPIST---- 82 
                99**99..9*******99***************.9**************.********988655999....*****......***********766.... PP

  GAGA_bind  94 alpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekk 192
                  p++ +v+s+t+  +s+q++++p ++ s +e    e+   +   e ++ +k++k++ + ++++ pk+kk++k+k+++++  ++v     + +r+k  kk
     484115  83 --PNYGSVMSETSGSNSMQMIHQPVVNSSRFE----EIPIPPREDEIVQPSKKRKMRGSISTPTIPKAKKMRKPKEERDVASSNV-----QqQRVKPAKK 171
                ..89999*************999888877777....3333344455666788888899999999999999999999554443333.....33779***** PP

  GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
                s+dlv+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRi+grKmSqgafkk+LekLa+eGy+++n++DLk+hWA+H
     484115 172 SVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLATEGYSFGNAIDLKSHWARH 271
                **************************************************************************************************** PP

  GAGA_bind 293 Gtnkfvtir 301
                Gtnkfvtir
     484115 272 GTNKFVTIR 280
                ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.4E-1001280IPR010409GAGA-binding transcriptional activator
SMARTSM012269.0E-1731280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAASFK GNLGLQLMST IDRNTKPFLP GRESNLMIGS NGSYHPREHD  60
MNYSWISQPK DNKFFNMLPI STPNYGSVMS ETSGSNSMQM IHQPVVNSSR FEEIPIPPRE  120
DEIVQPSKKR KMRGSISTPT IPKAKKMRKP KEERDVASSN VQQQRVKPAK KSVDLVINGV  180
SMDISGLPVP VCTCTGTPQQ CYRWGCGGWQ SACCTTNISV YPLPMSTKRR GARISGRKMS  240
QGAFKKVLEK LATEGYSFGN AIDLKSHWAR HGTNKFVTIR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap484115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072650.0AC007265.5 Arabidopsis thaliana chromosome 2 clone F23I14 map CIC11A04, complete sequence.
GenBankAY0652250.0AY065225.1 Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds.
GenBankAY0965500.0AY096550.1 Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880017.10.0protein BASIC PENTACYSTEINE1
RefseqXP_020880018.10.0protein BASIC PENTACYSTEINE1
SwissprotQ9SKD00.0BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLD7LPX40.0D7LPX4_ARALL; Basic pentacysteine 1
STRINGfgenesh2_kg.5__107__AT2G01930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.20.0basic pentacysteine1