PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485352
Common NameARALYDRAFT_485352
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 209aa    MW: 22533.7 Da    PI: 7.0837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485352genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0584106123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ykC+ CgksF++   L  H  +H
   485352  84 YKCSVCGKSFPSYQALGGHKTSH 106
              9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-982106No hitNo description
Gene3DG3DSA:3.30.160.601.9E-482106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78384111IPR007087Zinc finger, C2H2
PfamPF139121.2E-1484108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-9137164No hitNo description
PfamPF139122.7E-12141166IPR007087Zinc finger, C2H2
SMARTSM003551.2142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871142164IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MALETLNSPT STTTTTAPPP FLHCLDETEP ENLESWTKRK RTKRHRIDQP NPPSEEEYLA  60
LCLLMLARGS SDHHSSPSDH QKDYKCSVCG KSFPSYQALG GHKTSHRKPV SINNDDANNS  120
NGSVTNNGNI SNGLVGQSGK THNCSICFKS FPSGQALGGH KRCHYDGGNG NGNGDNSHRF  180
DLNLPADQVS DETLGKSQLS GEETKSVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap485352
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329781e-164AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293771e-164BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026861e-164CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879668.11e-154zinc finger protein AZF1
SwissprotQ9SSW13e-68AZF1_ARATH; Zinc finger protein AZF1
TrEMBLD7LT011e-152D7LT01_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.5__1344__AT3G49930.11e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-96C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]