PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485412
Common NameARALYDRAFT_485412
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 461aa    MW: 51637.1 Da    PI: 4.9304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485412genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.17.5e-10410946022374
    GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
             ++L r++e +s+ gdp++R+  yf+eAL+++ ++       + ++s++s+++ ++ + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+Df+i qG+Q
  485412 109 ETLIRIKESVSEFGDPIERVGYYFLEALSHKETE-------SPSSSSSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQ 204
             6899**************************9998.......4455555556799************************************************* PP

    GRAS 125 WpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
             W aLlqaLa+Rp+g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fef + + + ++ l+ +++rv+p+E+l+Vn++l+l++llde++++    
  485412 205 WSALLQALATRPSGKPtRIRISGIPAPSLGdsPGPSLIATGNRLRDFAAILDLNFEFYP-ILTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVG-- 304
             ************77776**********99988999************************.799**********************************9999.. PP

    GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.....rrerhetlekWrerleea 322
              + L+l +sl+P++v++ e e+++n+  F++r+ ++l++ysa+f+sle +l r+s+er  vEr+l+gr+i ++v    ++     r+  +e++e+Wr  +e+a
  485412 305 -TALRLARSLNPRIVTLGEYEVSLNRVGFANRVKNSLRFYSAVFESLEPNLERDSKERLRVERVLFGRRIFDLVRSDDDNnkpgtRFGLMEEKEQWRVLMEKA 406
             .*************************************************************************977654333448899************** PP

    GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
             GF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  485412 407 GFEPVTPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 460
             ***********************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.72462438IPR005202Transcription factor GRAS
PfamPF035142.6E-101109460IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
AVASEEFDSD EWMESLINGG DSLQTNPDFP IYGHDSFVSF PSRLCNPSNL NRVNKDDSAS  60
HQLSQPPTST TIWTPSPPSP QHHPPLPQPD FDLNQPILKA IHEYARKPET LIRIKESVSE  120
FGDPIERVGY YFLEALSHKE TESPSSSSSS SSSLEDFILS YKTLNDACPY SKFAHLTANQ  180
AILEATNQSN NIHIVDFGIF QGIQWSALLQ ALATRPSGKP TRIRISGIPA PSLGDSPGPS  240
LIATGNRLRD FAAILDLNFE FYPILTPIQL LNGSSFRVDP DEVLVVNFML ELYKLLDETA  300
TTVGTALRLA RSLNPRIVTL GEYEVSLNRV GFANRVKNSL RFYSAVFESL EPNLERDSKE  360
RLRVERVLFG RRIFDLVRSD DDNNKPGTRF GLMEEKEQWR VLMEKAGFEP VTPSNYAVSQ  420
AKLLLWNYNY STLYSLVESE PGFISLAWNN VPLLTVSSWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-134944601375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap485412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881475.10.0scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLD7LTG90.0D7LTG9_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.5__1404__AT3G50650.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]