PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485441
Common NameARALYDRAFT_485441
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 250aa    MW: 28532.8 Da    PI: 9.9524
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.81.4e-2956110358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +++Y+eC+kNhAas+Ggh+vDGC+Efm+  geegt +a+kCaAC+CHR+FHR+ev 
       485441  56 AAKYRECQKNHAASTGGHVVDGCCEFMAG-GEEGTLEAVKCAACNCHRSFHRKEVY 110
                  689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2757109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-2658109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2458109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.34659108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-26175243IPR009057Homeodomain-like
SuperFamilySSF466891.15E-18175243IPR009057Homeodomain-like
PROSITE profilePS500719.345180244IPR001356Homeobox domain
TIGRFAMsTIGR015652.1E-25182239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MELGGKCNAI TSTTMISTEV KPHTDPEEAK PDSDPSMALF PIKKENQKPK TRVDQAAKYR  60
ECQKNHAAST GGHVVDGCCE FMAGGEEGTL EAVKCAACNC HRSFHRKEVY GHMSSKQDQL  120
IITPAFYSSN SSYKAMQTRG MHPTGEIGRR TSSSSEDMKK ILSHRNQNID GKGLMMMMMR  180
KKKRVRTKIS EEQKEKMKEF AERLGWRMQK KDEEEIDKFC RMVNLRRQVF KVWMHNNKQA  240
MKRNSNISE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-191832401875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap485441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1756490.0AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07.
GenBankAL0498620.0AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881625.11e-176zinc-finger homeodomain protein 7
SwissprotQ9SVL01e-160ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLD7LTK40.0D7LTK4_ARALL; ATHB28
STRINGfgenesh2_kg.5__1433__AT3G50890.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-162homeobox protein 28