PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485555
Common NameARALYDRAFT_485555
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 212aa    MW: 24141.8 Da    PI: 6.1197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485555genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-1080129554
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
              + +r   NReA r++R++Kka+++ Le++vk L++ N+++  +l++ + 
  485555  80 SNKKRSCGNREAVRKYREKKKARTAYLEDEVKRLQSLNEQMLRKLQSQEM 129
             67899999*********************************999887554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-1072143No hitNo description
SMARTSM003381.6E-675143IPR004827Basic-leucine zipper domain
PfamPF077163.2E-1476128IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.85278144IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-879127No hitNo description
CDDcd146861.22E-1088129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
DFRGNQQGSN FDSLRGVFFG DLWMDEEEGK DQDRVTRGCS HTHSCNPPGP EDAFHSHTCF  60
HAHTHLIIPD QQENDHSDSS NKKRSCGNRE AVRKYREKKK ARTAYLEDEV KRLQSLNEQM  120
LRKLQSQEMM ESELIRLRTL VVEMQGKIDV ELCGFSFQKQ CNGSGFVYKE DGCSVATSNM  180
MCEAARVECE EGQTLHDPIH SFVPQSPPFS H*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap485555
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176290.0AK117629.1 Arabidopsis thaliana At3g51960 mRNA for putative bZip transcription factor Atbzip24, complete cds, clone: RAFL17-28-M01.
GenBankBT0054220.0BT005422.1 Arabidopsis thaliana clone U50385 putative bZIP family transcription factor (At3g51960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882554.11e-140basic leucine zipper 24
RefseqXP_020882555.11e-140basic leucine zipper 24
RefseqXP_020882556.11e-140basic leucine zipper 24
RefseqXP_020882557.11e-140basic leucine zipper 24
RefseqXP_020882558.11e-140basic leucine zipper 24
SwissprotQ8GTS11e-135BZP24_ARATH; Basic leucine zipper 24
TrEMBLD7LU061e-158D7LU06_ARALL; BZIP family transcription factor (Fragment)
STRINGfgenesh2_kg.5__1547__AT3G51960.21e-158(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.11e-137basic leucine zipper 24