PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485695
Common NameARALYDRAFT_485695
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 238aa    MW: 28031.3 Da    PI: 6.6828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485695genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ +++lG ++W++ a   g++R++k+c++rw +yl
           485695 11 RGPWLEEEDERLVKFITLLGERRWDSLAIVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding52.79.9e-1764108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+ ++ ++++++G++ W++Iar+++ gRt++++k++w+++
           485695  64 RGPMSQEEERIIFQLHALWGNK-WSKIARRLP-GRTDNEIKNFWRTH 108
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.008658IPR017930Myb domain
SuperFamilySSF466898.58E-279105IPR009057Homeodomain-like
SMARTSM007171.3E-121060IPR001005SANT/Myb domain
PfamPF002491.5E-131158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-191265IPR009057Homeodomain-like
CDDcd001678.09E-81358No hitNo description
PROSITE profilePS5129425.61959113IPR017930Myb domain
SMARTSM007172.8E-1663111IPR001005SANT/Myb domain
PfamPF002494.0E-1564108IPR001005SANT/Myb domain
CDDcd001673.45E-1066108No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDFKKEETLR RGPWLEEEDE RLVKFITLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE IKNFWRTHSR KKEEAQNYVK  120
LFEFRGKTGE ELLHKYKETE ITRTRTTSQE HGFDEVVSME SAKETNCGIC GRQSYGVMNS  180
PYENRISDWI SEISPDQSEA NLSEDHSSSS SENNINIGTW WFQETRDFEE FSCSLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2891122104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap485695
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172560.0AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195990.0AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052570.0BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881976.11e-173transcription factor MYB27
SwissprotQ9SCP11e-157MYB27_ARATH; Transcription factor MYB27
TrEMBLD7LUF61e-173D7LUF6_ARALL; AtMYB27
STRINGfgenesh2_kg.5__1687__AT3G53200.11e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-145myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]