PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

485843

Common Name

ARALYDRAFT_485843

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 184aa MW: 20254.3 Da PI: 10.275

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
485843	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	156.8	1.5e-48	36	173	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss. 104 +g++ C+dCGn+akk+C +eRCRtCCksrg++C thvkstW+p++ +r+ +++ s+rk++lk +kqs+++ + l++++s++e ++++ 485843 36 VGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS----------------SSSPSERKKKLKLDKQSSANVSLLPTTTSRQERSFKEg 122 68999**************************************9998................34567777778889999999999999999999998878 PP DUF702 105 lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ 485843 123 LPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 173 ***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.8E-42	38	172	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.3E-27	40	81	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.8E-29	123	171	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLGLRNIILL PPPPQITTRL SPSPVNIAAV EDNNTVGEKV CRDCGNRAKK ECLFERCRTC 60 CKSRGYNCVT HVKSTWIPSS ATRSSSSPSE RKKKLKLDKQ SSANVSLLPT TTSRQERSFK 120 EGLPGKIEAP AVFKRTRVTA ISNNEQAEIG YQATVTISGH VFKGFLHYYG VDHNKAFPCL 180 SQK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	485843

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF446889	0.0	AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBank	AY052675	0.0	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879621.1	1e-135	protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	1e-116	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	D7LUT8	1e-133	D7LUT8_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__1835__AT3G54430.1	1e-134	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-105	SHI-related sequence 6

Link Out ? help Back to Top
Phytozome	485843
Entrez Gene	9312322

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]