PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486007
Common NameARALYDRAFT_486007
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 388aa    MW: 42399.5 Da    PI: 5.7097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486007genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-185297147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v++lG ++W++Iar ++ gR++k+c++rw + 
           486007 52 KGPWSTEEDAVLTKLVRKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 97
                     79******************************.***********985 PP
2Myb_DNA-binding48.32.3e-15104148147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia+++  gRt++ +k++w++ 
           486007 104 RKPFSDEEDRMIISAHAVHGNK-WAVIAKMLT-GRTDNAIKNHWNST 148
                      789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.29747102IPR017930Myb domain
SuperFamilySSF466893.59E-3049145IPR009057Homeodomain-like
SMARTSM007175.0E-1551100IPR001005SANT/Myb domain
PfamPF002498.3E-175297IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2553105IPR009057Homeodomain-like
CDDcd001673.78E-145496No hitNo description
SMARTSM007171.8E-15103151IPR001005SANT/Myb domain
PROSITE profilePS5129420.339103153IPR017930Myb domain
PfamPF002496.5E-14104148IPR001005SANT/Myb domain
CDDcd001672.05E-11106149No hitNo description
Gene3DG3DSA:1.10.10.609.7E-23106152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEGETHRSEP LPLTSADSDE GISASIEAEL AELAAGDSSG GGGGGGIKSK VKGPWSTEED  60
AVLTKLVRKL GARNWSLIAR GIPGRSGKSC RLRWCNQLDP CLKRKPFSDE EDRMIISAHA  120
VHGNKWAVIA KMLTGRTDNA IKNHWNSTLR RKYADLWNNG QWMANSVTTA YVKNENVDEA  180
SNPSSKQQLP QGDINSPPKP PQVSDVVMEE AANEPQEQAP PLESNVPIDN NVFRPVARVG  240
AFSVYNPTSQ RNGYRDHNIV PCEGPLIQAA KPDSLAGKFL QSLCDEPQIP SKCGHGCSTH  300
PAEIKFSSNS VLGPEFVDYE EPSAVFNQEL ISIATDLNNI AWIKSGLDNA VIREAEQSLK  360
IDNFNYNDPR IKFTGMMPRQ DFFCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-38461521107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627340.0AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAY1363250.0AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankAY5196000.0AY519600.1 Arabidopsis thaliana MYB transcription factor (At3g55730) mRNA, complete cds.
GenBankBT0000920.0BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881975.10.0transcription factor MYB25
SwissprotO041921e-121MYB25_ARATH; Transcription factor MYB25
TrEMBLD7LV820.0D7LV82_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__1999__AT3G55730.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]