PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486038
Common NameARALYDRAFT_486038
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 551aa    MW: 60971.8 Da    PI: 7.6063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08229249526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C+ f++ G C+ Gd+C +aHg
   486038 229 PCPEFRK-GSCPKGDSCEYAHG 249
              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-119126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00564575IPR002110Ankyrin repeat
PROSITE profilePS5029714.02645154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-1346147IPR020683Ankyrin repeat-containing domain
CDDcd002041.28E-1147143No hitNo description
SMARTSM002489580112IPR002110Ankyrin repeat
SMARTSM003566.3E-5224250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976224251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6229250IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5229249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4256288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812259283IPR000571Zinc finger, CCCH-type
SMARTSM0035643259282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MLLLEFAACD DLDSFKRDVE EKGLDLDEPG LWYCRRVGSK KMGFEERTPL MVAAMYGSIK  60
VLTFIISTGK SDVNRACGEE RVTALHCTVA GCSVNMIEVI TVLLDASALV NSVDANGNQP  120
LDVFVRVSRF VASPRRKAVE FLLRGGGVSG LVDEAVEEEI KIVSKYPADA SLPDINEGVY  180
GSDEFRMYSF KVKPCSRAYS HDWTECAFVH PGENARRRDP RKYPYTCVPC PEFRKGSCPK  240
GDSCEYAHGV FESWLHPAQY KTRLCKDETG CARKVCFFAH KREEMRPVNA STGSAVAQSP  300
FNSLEMMPGL SPLAYSSGVS TPPVSPMANG VPSSPRNGGS WQNRVNTLTP PALQLNGGSR  360
LKSTLSARDI DMEMEMELRL RGFGNNVEET FGSYVSSPGR NSQMGQNMNQ HYPSSPVRQP  420
PSHHGFESSA AAAVAVMKAR SSAFAKRSLS FKPSTQAAPQ SNFSDWGSPN GKLEWGMKGE  480
ELNKMRRSVS FGIHGNNNNN AARDYRDEPD VSWVNSLVKD SVVSERNFGM NERVRIMSWA  540
EQMYRENEQT V
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486038
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2268610.0AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBankAL1638320.0AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBankAY0562820.0AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBankBT0086250.0BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880437.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLD7LVA70.0D7LVA7_ARALL; Zinc finger (CCCH-type) family protein (Fragment)
STRINGfgenesh2_kg.5__2030__AT3G55980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]