PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

486116

Common Name

ARALYDRAFT_486116

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 233aa MW: 26217.9 Da PI: 7.1022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
486116	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	50	96	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR++iN +++Lr ll + K +Ka+ L k+v+ +++L 486116 50 RNHKEAERKRREKINFHLNKLRNLLSCN-----SKTDKATLLAKVVQRVREL 96 58*********************997.....7**********998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.17	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.21E-8	50	99	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-11	50	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	50	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-7	50	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-8	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.7E-4	134	203	No hit	No description
CDD	cd04873	0.00214	135	201	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MQAEISDQIF YSFLTGGLCA SSTSSTTTSL FSSFAIEDKV AEDKALASLR NHKEAERKRR 60 EKINFHLNKL RNLLSCNSKT DKATLLAKVV QRVRELKQQT LEITDETLPS ETDEISVLNF 120 EDCSNDDGRR IIFKVSFCCE DRPDLLQDLM ETLKYLQMET LFAEMTTVGG RTRNVLVVAA 180 DKEHHGVQSV NFLQNALKSL LERSSKSVMM GHGGGGEERL KRRRALDHII MV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	60	ERKRRE
2	56	61	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	486116

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL390921	0.0	AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002878108.1	1e-171	putative transcription factor bHLH107
Swissprot	Q9LET0	1e-131	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	D7LVJ6	1e-169	D7LVJ6_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.5__2108__AT3G56770.1	1e-170	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3642	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-131	bHLH family protein

Link Out ? help Back to Top
Phytozome	486116
Entrez Gene	9314176

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]