PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486194
Common NameARALYDRAFT_486194
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 252aa    MW: 27813.5 Da    PI: 8.3646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486194genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06223245223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
              +Cp+C++ F+++ +L +Hi + H
   486194 223 VCPKCSRGFRDPVDLLKHIDKdH 245
              7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.88E-12457No hitNo description
PROSITE profilePS510397.8371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.4E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.2E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.6E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-891146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.45E-993144No hitNo description
PROSITE profilePS510398.05198151IPR000058Zinc finger, AN1-type
PfamPF014285.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0047101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.891222250IPR007087Zinc finger, C2H2
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLQVFCLDHR SYMKHDCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCSGP KKPDSSFSFM GFLSTNTKEA PPPSSSSSSS RWSSLFASAE  180
ASISRLGNDI SQKLQFASGS DGNSGKTQEK NGKQNCGKVT VDVCPKCSRG FRDPVDLLKH  240
IDKDHRGTSK A*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881486.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_020881487.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-172SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLD7LVT60.0D7LVT6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2186__AT3G57480.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-172C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]