PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486315
Common NameARALYDRAFT_486315
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 323aa    MW: 36135.6 Da    PI: 9.8782
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486315genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1326125186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 
               +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k++k +k++ ++ +     s +p+f+ l+
    486315  26 CWSEEATFTLIQAWGNRYVELSRGNLRQKHWQEVANAVndrhyntgrnvsaAKSQPYRTDVQCKNRIDTLKKKFKVEKARVSESNpGAYISPWPFFSALD 125
               7************************************************997777789********************99888752456789****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-2424127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MMDAVNDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRYVELSRGN LRQKHWQEVA  60
NAVNDRHYNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKFK VEKARVSESN PGAYISPWPF  120
FSALDDLLRE SFPTSSNPDS TDNIPSQRLS LPMAIIPVPV APRSAIPRRP ATSPAIIPHV  180
GDDLLGFRGN LNAFAAAAAA AACPASEDDS EGSRSRSSGR SGSKKKRERE TEKKQGYKEV  240
ADAIERLGQI YERVEERKRK EMVELEKQRM RFAKELECHR MQLFTEMQVR LHKLRRTSGS  300
KGPTSSASAA LDYGMIDFPS YF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap486315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180840.0AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15.
GenBankBT0055200.0BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880580.10.0trihelix transcription factor ASIL2
TrEMBLD7LW590.0D7LW59_ARALL; Transcription factor
STRINGfgenesh2_kg.5__2307__AT3G58630.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-177sequence-specific DNA binding transcription factors