PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486537
Common NameARALYDRAFT_486537
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 624aa    MW: 68182.9 Da    PI: 4.8027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.21.4e-1032466222374
    GRAS   2 velLlecAeavss....gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
             +++L+++A  +++    ++  laq +Larl+++ +++++      p++R+a+y+teAL++ l++     +++ pps ++++n + ++aa+++fse+sP+l+f 
  486537 246 IDQLFSAAAELTTnggdNNPVLAQGILARLNHNLNNNDTnnnpkpPFHRAASYITEALHSILQG-----SSSSPPSLSPPQNLIFRIAAYRAFSETSPFLQFV 343
             567888887777656434555************6666644789999******************.....78889999999*********************** PP

    GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
             ++taNq+Ile++eg +r+Hi+Dfdi++G+QW++L+q+La +R+  ++ppsl+iT+++sp+++ ++ el+ t+e+L++fA e+gv+fe+++l ++ l + +++ 
  486537 344 NFTANQTILESFEGFDRIHIVDFDIGYGGQWASLIQELAgKRNrsSSPPSLKITAFASPSTVsDEFELRFTEENLRNFAGETGVSFEIELLNMEILLNPTYWP 446
             ***************************************85556699*************9999***************************99999999**** PP

    GRAS 194 Lrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
             L++ +   +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+++  +++e+++++Er+++++
  486537 447 LSFFRsseKEAIAVNLPISSIVSG--------YLPLILRFLKQISPNVVVCSDRSCDRnNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAASSIERFCVQP 541
             *8887777*********9655544........5677**********************99**********************88877999************* PP

    GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
             +i+++++++ ++    +e+   Wr+ ++++GF+pv+ls++a++qa++ll++ +++g+++e++   s slvl+W++++Lv+vSaW+
  486537 542 SIQKLLTNRYRW----MERSPPWRSLFGQCGFSPVTLSQTAETQAEYLLQRNPMRGFHLEKRqssSSSLVLCWQRKELVTVSAWK 622
             ************....9*******************************************66555889****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.88223599IPR005202Transcription factor GRAS
PfamPF035144.9E-101246622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVDE DLCFIVNNGG FSEPTSVLDS  60
VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD PMGFEDLDGV LSGGSPGQEQ  120
SIFRLIMAGD VVDPGSQFVG FDTGSGSDPV IDNPNPLFGY GFPFHDPPEE EKFQISIHPN  180
PSFFSDPPSS PPAKRLNSGQ PGSQHHHHQW GFPFTDPGHE SHDPFLTPPK IAGEDQNDQD  240
QSMVIIDQLF SAAAELTTNG GDNNPVLAQG ILARLNHNLN NNDTNNNPKP PFHRAASYIT  300
EALHSILQGS SSSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR  360
IHIVDFDIGY GGQWASLIQE LAGKRNRSSS PPSLKITAFA SPSTVSDEFE LRFTEENLRN  420
FAGETGVSFE IELLNMEILL NPTYWPLSFF RSSEKEAIAV NLPISSIVSG YLPLILRFLK  480
QISPNVVVCS DRSCDRNNDA PFPNGVINAL QYYTSLLESL DSGNLNNAEA ASSIERFCVQ  540
PSIQKLLTNR YRWMERSPPW RSLFGQCGFS PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ  600
SSSSSLVLCW QRKELVTVSA WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3529162239375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881462.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLD7LRS90.0D7LRS9_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.5__2529__AT3G60630.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]