PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486694
Common NameARALYDRAFT_486694
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27689.8 Da    PI: 5.0129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486694genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93e-173384556
              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +f++eq++ Le  Fe++  +  +++ + A++lgL+ rqV +WFqN+Ra++k
    486694 33 KRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 84
              68*************************************************9 PP
2HD-ZIP_I/II116.81.2e-3731122293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +++r+s+eq+k+LE  Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y++l+++ e ++ke+++L +el++
       486694  31 NQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRSNYNNLASQFEIMKKEKQSLVTELQR 122
                  689************************************************************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-17980IPR009057Homeodomain-like
SuperFamilySSF466891.02E-161688IPR009057Homeodomain-like
SMARTSM003893.4E-132490IPR001356Homeobox domain
PROSITE profilePS5007116.8762686IPR001356Homeobox domain
PfamPF000461.5E-143384IPR001356Homeobox domain
CDDcd000869.45E-133487No hitNo description
PRINTSPR000312.7E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000312.7E-56682IPR000047Helix-turn-helix motif
PfamPF021834.3E-1386126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEEGDLFNCC FSEINSGMTM NKKKMKKKSN NQKRFSEEQI KSLELIFESE TRLEPRKKVQ  60
VARELGLQPR QVAIWFQNKR ARWKTKQLEK EYNILRSNYN NLASQFEIMK KEKQSLVTEL  120
QRQNEEMQKP KEEKHHECCG DQGVALSSST ESHNGKSEPE VRLNQGIVLC DDGDYNNNIK  180
TEYFGFEEET DHELMNIVEK ADDSCLTSSE NWGGFNSDSL LDQSSSNYPN WWEFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap486694
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598280.0AY059828.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (F21F14.6) mRNA, complete cds.
GenBankAY0871870.0AY087187.1 Arabidopsis thaliana clone 32615 mRNA, complete sequence.
GenBankBT0022060.0BT002206.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (At3g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880841.11e-175homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2761e-143ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLD7LSQ41e-174D7LSQ4_ARALL; ATHB-12
STRINGfgenesh2_kg.5__2686__AT3G61890.11e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-141homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]