PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486765
Common NameARALYDRAFT_486765
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 432aa    MW: 49394.2 Da    PI: 4.8861
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486765genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.24.3e-24213271155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
              kpr++Wt+eLH++F  ave+LG  ekA Pktil+     m+v+gLt+++v+SHLQkYR 
   486765 213 KPRMQWTTELHHKFEVAVEKLGSLEKAFPKTILKYmqeeMNVQGLTRNNVASHLQKYRQ 271
              79******************************9872333589****************6 PP
2Response_reg65.82e-22431491107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + +  +++++ +  y +v+  +dgeea++ l +++  +Dl++ D  mp+++Gl++l +i +e  +lp+++++   ++e++ e +k+Ga 
        486765  43 VLLVDADSNSLLPMKNLMIQYSY-QVTKYEDGEEAMAFLMKNKqeIDLVIWDFHMPDINGLDALNTIGKEM-DLPVVIMSHDHKKETVMESIKYGAC 137
                   79999999999999999999***.***************666667**********************6644.7*******9999************* PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   dfl+Kp+++e +
        486765 138 DFLVKPVSKEVI 149
                   ******998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.7E-3040164No hitNo description
SuperFamilySSF521723.13E-2840162IPR011006CheY-like superfamily
SMARTSM004482.8E-1841152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.06142157IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-1943149IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.72E-1944156No hitNo description
PROSITE profilePS512949.736210274IPR017930Myb domain
SuperFamilySSF466894.84E-15211274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-23211274IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-20213271IPR006447Myb domain, plants
PfamPF002493.8E-9215270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSVSANLLDE NSRDLRKEVP CDDEIGSPIN DDDEEFPTTS IRVLLVDADS NSLLPMKNLM  60
IQYSYQVTKY EDGEEAMAFL MKNKQEIDLV IWDFHMPDIN GLDALNTIGK EMDLPVVIMS  120
HDHKKETVME SIKYGACDFL VKPVSKEVIA VLWRHVYRKR MSKSGLDKPG ESGTVESDPD  180
EYDDLGQDNL YQSNEEGSKN SSDQKGEKPA TKKPRMQWTT ELHHKFEVAV EKLGSLEKAF  240
PKTILKYMQE EMNVQGLTRN NVASHLQKYR QNSKQKTRTH QEPQEDFFWR NAGPDATLAA  300
SNPPLSSNLN IHATASYLMN NQAAPRASYF MNNQAASPIP YPSNSCLPMN NNNYFMTKPF  360
TYIDQFQQQQ QQYHSSLNLP SMLTKQEPRH VPLSAMENFD TPMIYNSSFH FDHDEYFPPE  420
GFNNFDQIGQ N*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486765
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-164AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-164CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878470.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ80.0ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLD7LT850.0D7LT85_ARALL; Two-component response regulator
STRINGfgenesh2_kg.5__2757__AT3G62670.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.10.0response regulator 20