PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

486883

Common Name

ARALYDRAFT_486883

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 225aa MW: 25032 Da PI: 8.8444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
486883	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs++ L H++ H 486883 78 FACTFCKKEFSTSQALGGHQNAH 100 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-5	75	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.48E-6	75	105	No hit	No description
Pfam	PF13912	5.7E-6	77	102	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.655	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MELNLSTPTS CSSSSISSSS HEVIPRTKGK LKEKVTAEPS KETPRLEFRF LFNESTRSHP 60 GFLDEAEGTR NEAKARVFAC TFCKKEFSTS QALGGHQNAH KQERSLAKRR KEIELNYPGL 120 SFYSQYPPSG VSYSSSSSQY DLGVRYNPNI AKTKPYPFNI FTCRLGYRGL NIPLLSHLSV 180 PKTDDLSKNL ISNLEGSIQD QAEKKDQPDT DPSKDSDIDL SLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	486883

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL162351	0.0	AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872989.1	1e-164	zinc finger protein 4
TrEMBL	D7M6E6	1e-163	D7M6E6_ARALL; Zinc finger family protein
STRING	fgenesh2_kg.6__17__AT5G01860.1	1e-164	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Phytozome	486883
Entrez Gene	9309057