PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

487022

Common Name

ARALYDRAFT_487022

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 404aa MW: 42825.1 Da PI: 9.3654

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
487022	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.6e-38	95	154	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ 487022 95 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 154 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-39	78	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	97	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MVFTSFPTYP DHSSNWQQQH QPITTTVGFT GNNNINQQFL PHHPLPPQPQ PQQTPPQLHH 60 NNGNGGGSGP GGPGVLIRPG SMAERARLAN IPLPETALKC PRCDSTNTKF CYFNNYSLTQ 120 PRHFCKACRR YWTRGGALRS VPVGGGCRRN KRTKNSSGGG GGGGSTSSGN SKSQDSATSN 180 DQYHHRAMAN NQMGPPSSSS SLSSLLSSYN AGLIPGHDHN NNNNNNNILG LGSSLPPLKL 240 MPPIDFTDNF TLQYGAVSAP SYHIGGGSSG GAAALLTGFD QWRFPATNQL PLGGLDPFDH 300 QMEQQNPGYG LVTGSGQYRP KNIFHNLISS SSASSAMVTA TASQLASVKM EDSNNQLNLS 360 RQLFGNEQQL WNIHGAAAAS TAAATSSWSD VSNNFSSSST SNI*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MVFTSFPTYP DHSSNWQQQH QPITTTVGFT GNNNINQQFL PHHPLPPQPQ PQQTPPQLHH  60
NNGNGGGSGP GGPGVLIRPG SMAERARLAN IPLPETALKC PRCDSTNTKF CYFNNYSLTQ  120
PRHFCKACRR YWTRGGALRS VPVGGGCRRN KRTKNSSGGG GGGGSTSSGN SKSQDSATSN  180
DQYHHRAMAN NQMGPPSSSS SLSSLLSSYN AGLIPGHDHN NNNNNNNILG LGSSLPPLKL  240
MPPIDFTDNF TLQYGAVSAP SYHIGGGSSG GAAALLTGFD QWRFPATNQL PLGGLDPFDH  300
QMEQQNPGYG LVTGSGQYRP KNIFHNLISS SSASSAMVTA TASQLASVKM EDSNNQLNLS  360
RQLFGNEQQL WNIHGAAAAS TAAATSSWSD VSNNFSSSST SNI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	487022

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493731	0.0	AB493731.1 Arabidopsis thaliana At5g02460 mRNA for hypothetical protein, partial cds, clone: RAAt5g02460.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879080.1	0.0	dof zinc finger protein DOF5.1
Swissprot	Q9LZ56	0.0	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	D7M7T3	0.0	D7M7T3_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__156__AT5G02460.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-161	Dof family protein

Link Out ? help Back to Top
Phytozome	487022
Entrez Gene	9307045

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]