PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487349
Common NameARALYDRAFT_487349
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 248aa    MW: 28089.7 Da    PI: 8.6583
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487349genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.71.1e-1123105286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               W+++ + +L+ea  ++  +l+ g+l+++++++v++++     + g +++ +qCk++++ l+k+yk +k+  +       st++++++l+
    487349  23 WSEEATATLVEAWGNRYVKLNHGNLRQNDLKDVADAVnsrhGDNGRKKTDIQCKNRIDTLKKKYKTEKAKLSP------STWRFYNRLD 105
               *************************************998888999**********************99986......68****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2221106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
METTPQSKPS VSHRPPVGRE DWWSEEATAT LVEAWGNRYV KLNHGNLRQN DLKDVADAVN  60
SRHGDNGRKK TDIQCKNRID TLKKKYKTEK AKLSPSTWRF YNRLDVLIGP VVKKSAGGVV  120
KSAPFINPSH LNPTGSKSNG SSLDDDDDDD DEVGDWEFVA RKHPRVEEVD LSEGSTCREL  180
ATAILKFGEV YERIEGKKQQ MMLELEKQRM EVTKEVELQR INMLMEMQLE IEKSKHRKRG  240
GGSGKQL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap487349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373320.0AC237332.1 Arabidopsis lyrata clone JGIFAFI-57L22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873212.10.0trihelix transcription factor ASIL2
TrEMBLD7LYY30.0D7LYY3_ARALL; Transcription factor
STRINGfgenesh2_kg.6__483__AT5G05550.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-134sequence-specific DNA binding transcription factors