PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

487538

Common Name

ARALYDRAFT_487538

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 151aa MW: 16995.5 Da PI: 9.9742

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
487538	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	5.8e-12	50	105	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 k+ +r ++NR+AA++sR +K ++i+ L +++ eL+++ ++L++el +++ +l+ 487538 50 KKLKRIISNRVAAQKSRWKKVQYIDALVKRSMELQGQVSMLRSELAIASEHKRRLE 105 899*****************************************987776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.7E-12	42	107	No hit	No description
SMART	SM00338	4.6E-13	46	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.209	48	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.08E-10	50	105	No hit	No description
Pfam	PF00170	6.5E-10	50	106	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.85E-11	51	102	No hit	No description
PROSITE pattern	PS00036	0	53	68	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MSFPVVATSF GVSQSGSQAG EKKGGYVHYE VEPGFTIRMR HDIDPTTDPK KLKRIISNRV 60 AAQKSRWKKV QYIDALVKRS MELQGQVSML RSELAIASEH KRRLENEQRQ LKECISARVQ 120 HCIDSDGVIE ECKAEIERLK KNLAPLSNLS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	487538

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY960974	1e-167	AY960974.1 Arabidopsis thaliana activator of spomin LUC3 (ASML3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873298.1	1e-108	basic leucine zipper 34
TrEMBL	D7LZY2	1e-107	D7LZY2_ARALL; DNA binding protein
STRING	fgenesh2_kg.6__672__AT5G07160.1	1e-108	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14418	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07160.1	4e-97	bZIP family protein

Link Out ? help Back to Top
Phytozome	487538
Entrez Gene	9307324