PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487583
Common NameAl5g07500, ARALYDRAFT_487583, PEI1
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 247aa    MW: 28288.6 Da    PI: 7.2221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-0799118626
              -SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
              C+ f+  G C++Gd+C FaHg
   487583  99 CPAFRN-GACHRGDSCEFAHG 118
              666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-493119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.42793120IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-698118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-599121IPR000571Zinc finger, CCCH-type
SMARTSM0035622128151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLKSVSPIAF YDIGEHQQYS TFGYIVSKPG NAGAYEIDPP IPNIDDAIYG SDEFRMYAYK  60
IKRCPRTRSH DWTECPYAHR GEKATRRDPR RYTYCAVACP AFRNGACHRG DSCEFAHGVF  120
EYWLHPARYR TRACNAGNLC QRKVCFFAHA PEQLRQSEGK HRCRYAYRPV RARGGGNGDG  180
VAMRMDGEDY DTSRSPVRSG KDDLDSNEEK VLLKCWSRMS IVDDHYEPSD LDLDLSHFDW  240
ISELVD*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap487583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2928600.0AY292860.1 Arabidopsis lyrata subsp. lyrata zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP14 (GRP14), pollen specific glycine-rich protein GRP18 (GRP18), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), and pollen specific glycine-rich protein GRP20 (GRP20) genes, complete cds; glycine/proline-rich protein (Al5g07570) gene, partial cds; Al5g07580 pseudogene, complete sequence; and WD repeat-like protein (Al5g07590), oleosin (Al5g07600), and F box protein family (Al5g07610) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871275.10.0zinc finger CCCH domain-containing protein 54
SwissprotO650361e-179C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6WER20.0Q6WER2_ARALL; Zing finger transcription factor PEI1
STRINGfgenesh2_kg.6__717__AT5G07500.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-173C3H family protein