PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487639
Common NameARALYDRAFT_487639
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 242aa    MW: 27128.3 Da    PI: 7.7996
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487639genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP912.6e-2831109266
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
              g+kdrhsk++T +g+RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl+ ak  ++ l+ +              +
  487639  31 FGGKDRHSKVCTVRGLRDRRIRLSVMTAIQLYDLQERLGLSQPSKVIDWLLEVAKNDVDLLPPLqfppgfpqlnpnltG 109
             689************************************************************9444444444444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2633152IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2253391IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGIKQEDQKS SLSLLKQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ  60
LYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF PQLNPNLTGL GESFPGVFDL  120
GRTQRETLDL EKSKWVNLDH GFDHSDDLHF SNSIQSNKLS FPSNTSSSSS YHYNLGHLQQ  180
SLLDQSGNVT IAFSNNYNNN NLNPPEAETM SSLFPTRYPS FLGGGQLQLF SSTSSQPDHI  240
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-173892155Putative transcription factor PCF6
5zkt_B3e-173892155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap487639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3576120.0AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project).
GenBankBT0299950.0BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871306.21e-177transcription factor TCP17
SwissprotQ9LEZ91e-155TCP17_ARATH; Transcription factor TCP17
TrEMBLD7M1821e-175D7M182_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__773__AT5G08070.11e-176(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-131TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]