PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487648
Common NameARALYDRAFT_487648
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 93aa    MW: 11183.7 Da    PI: 9.8024
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487648genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-101471458
            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae...NkaLkkeleelkkevak 58
             kr rr++ NRe+ArrsR R ++  e L+  vk+L a    N++  +e+++lk++v++
  487648 14 EKRLRRLATNRESARRSRMRERMMKEVLQMQVKQLMALleyNHQILQENSQLKETVSS 71
            59*******************************98764444*************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-101172No hitNo description
SMARTSM003381.8E-51178IPR004827Basic-leucine zipper domain
PfamPF077162.9E-91166IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-61572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
HYRHQQPFVV TDQEKRLRRL ATNRESARRS RMRERMMKEV LQMQVKQLMA LLEYNHQILQ  60
ENSQLKETVS SFYNQYTISY GNHEDILGNI ND*
Cis-element ? help Back to Top
SourceLink
PlantRegMap487648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3576129e-53AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project).
GenBankCP0026889e-53CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876616.15e-49LOW QUALITY PROTEIN: basic leucine zipper 8
TrEMBLD7M1905e-61D7M190_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__782__AT5G08141.19e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17031811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08141.15e-39basic leucine-zipper 75