PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487795
Common NameARALYDRAFT_487795
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 212aa    MW: 23916.8 Da    PI: 6.5203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487795genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09127167954
             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  487795 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 167
             699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-14123176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-12124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.60E-6141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNPSLFQNYT WNNIINSSNN NKNDDHHQHN NDPIGMAMDQ YTQLHIFNPF SSSHFPPLSS  60
SLSTTTLFSG DQEEDEDEEE PLEELGAMKE MMYKIAAMQS VDIDPATVKK PKRRNVRISD  120
DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRLLNNNPGN  180
PSPPPQDQAS QALTTSWISP PPPPGRGVGG LV
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap487795
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207520.0AB020752.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH16.
GenBankAL3539940.0AL353994.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620274.15e-97PREDICTED: transcription factor HEC3
SwissprotQ9LXD82e-96HEC3_ARATH; Transcription factor HEC3
TrEMBLD7M2691e-156D7M269_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__929__AT5G09750.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.17e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]