PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487937
Common NameARALYDRAFT_487937
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 426aa    MW: 48250.1 Da    PI: 7.1146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487937genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-18103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v q+G + W+ I++++  gR +kqc++rw+++l
           487937 103 KGQWTAEEDRKLIKLVMQHGERKWAVISEKLE-GRAGKQCRERWHNHL 149
                      799*****************************.*************97 PP
2Myb_DNA-binding55.71.2e-17155197145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ llv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
           487937 155 KDSWSEEEESLLVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 197
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.52898153IPR017930Myb domain
SuperFamilySSF466897.49E-29100196IPR009057Homeodomain-like
SMARTSM007172.5E-16102151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-27104157IPR009057Homeodomain-like
CDDcd001672.29E-14106149No hitNo description
PfamPF139219.1E-20106166No hitNo description
PROSITE profilePS5129419.147154204IPR017930Myb domain
SMARTSM007171.7E-14154202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-20158202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEEQRIQEKS FAHGAAPPLT AVERFLNGQK NDTLCFKKQE RSVDRPILKT TRAIEIRNEN  60
KENMMFGPRK EKILAVIGEM VVKGAAKDCK EITKKRPSKN LIKGQWTAEE DRKLIKLVMQ  120
HGERKWAVIS EKLEGRAGKQ CRERWHNHLR PDIKKDSWSE EEESLLVEAH TRIGNKWAEI  180
AKLIQGRTEN SIKNHWNATK RRQNSKRKHK RSKNADNNSD IDDLSPSAKR PCILENYIRR  240
IESNDKDNSE NIMTTTSGNH VLSTSNLDQI NSEDSTSSLL DDPYDEELVF LKNIFANHPV  300
SLENINLSQG MDEITQSSSS GFMIENPNPK PNLYNNIFGN HLGAMVTEPS NTSHLASDIY  360
LSDLLNGTAS SSSSFSFLSS NNNEQAGENE LLLPQANSTS ERREMDLIEM LSGSTQGSNI  420
WFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-441012032104C-Myb DNA-Binding Domain
1msf_C2e-441012032104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199210KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap487937
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871451.10.0myb-like protein A
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLD7M3L50.0D7M3L5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1071__AT5G11050.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]