PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488674
Common NameARALYDRAFT_488674
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 289aa    MW: 33176.3 Da    PI: 9.3199
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488674genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-1818109196
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ffk+l p+d +++ +  +p +f+++++  +e s +++l+ ++g sW +k+  +++++  ++ +kGW +F ++ngL  ++f++F+++g+++f   v +
  488674  18 FFKILRPADLSSEIMRGIPLNFIKSISD-EEFSHKMVLKVSWGSSWPIKI--CRNPSFyFMEKKGWDQFLSDNGLGNNEFLTFTHQGNMCF--SVDI 109
             99*********************99964.57899****************..999999556669***********************9999..6655 PP
2B334.92.7e-112102861596
             -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
              l +pk f e h+  ++e ++ ++ d++g rsW+v ++  ++++r  + +GW + +k+ gL  gD+++F+l++   +e++vkv
  488674 210 FLGVPKMFEELHM--PREATMFKIHDPEGkRSWDVMYKLAGTQSR--FCAGWIRLAKELGLVIGDVCTFTLIK--PTEMLVKV 286
             4668999987776..4567799****99889******87777777..668********************987..66678887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1911112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1914116IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-1816110No hitNo description
PfamPF023626.0E-1718109IPR003340B3 DNA binding domain
SMARTSM010192.6E-2218113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5218113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-17196286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533196288IPR003340B3 DNA binding domain
CDDcd100172.41E-13197284No hitNo description
Gene3DG3DSA:2.40.330.101.3E-15197287IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-10199287IPR003340B3 DNA binding domain
PfamPF023626.0E-8208286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKNRAFGQIM DDAENPGFFK ILRPADLSSE IMRGIPLNFI KSISDEEFSH KMVLKVSWGS  60
SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NNEFLTFTHQ GNMCFSVDIY QIDGKELLTP  120
RRSATIASSS GRNKREQRKN IYEDVKKEEE IESWSESSYP GLKAAESTGR RQKHVTKKKK  180
KMTMCNDSED DNVSLVPEFT LTIKKSYLFF LGVPKMFEEL HMPREATMFK IHDPEGKRSW  240
DVMYKLAGTQ SRFCAGWIRL AKELGLVIGD VCTFTLIKPT EMLVKVSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap488674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878530.0AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
GenBankBT0040990.0BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBankBT0055530.0BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877797.10.0B3 domain-containing protein At5g18090
SwissprotQ9FK610.0Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLD7LXR40.0D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.6__1808__AT5G18090.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-176B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]