PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488696
Common NameARALYDRAFT_488696
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 386aa    MW: 43567.6 Da    PI: 6.4569
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488696genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.47.9e-342882155
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl
   488696 28 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82
             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1552585IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-322683IPR009057Homeodomain-like
SuperFamilySSF466892.33E-172783IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-242883IPR006447Myb domain, plants
PfamPF002499.9E-113081IPR001005SANT/Myb domain
PfamPF143791.0E-25129175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPIHSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENPPEV DESHSESLSI  120
GPQPTMNLPI SDALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE KAQETLGRQN  180
LGAAGIEATK AQLSELVSKV SAEYPDSSFL EPKELQNLRH QQMQTTYPPN SSLDSCLTSS  240
EGNQKARKML DNRLGLRTYI GDSTSEQKEI MEEPFFHRME LTWAEEESLR ENNNRPYLST  300
MVNNTEPRIS SSRRSPGRLS IGVGLHEHRG GSSNNSEYTE ERFNENGEDC KLETHTRTAL  360
DLNTRDENYG TTRPKQFDLN GFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-202884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-202884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-202884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-202884157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap488696
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0034210.0BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878825.10.0myb-related protein 1 isoform X1
RefseqXP_020878826.10.0myb-related protein 1 isoform X1
SwissprotQ9FK470.0PHLA_ARATH; Myb-related protein 1
TrEMBLD7LXT00.0D7LXT0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1830__AT5G18240.40.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.40.0myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]