PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488738
Common NameARALYDRAFT_488738
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 475aa    MW: 50073.6 Da    PI: 7.1329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488738genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125378227
             -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
             +++ C +f+rtG C yG+rC+F+H++
   488738 53 DEPDCIYFLRTGVCGYGSRCRFNHPR 78
             6899********************96 PP
2zf-CCCH38.71.6e-1299124227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              +++ C++f+rtGtCk+G++Ck++H++
   488738  99 GQPVCQHFMRTGTCKFGASCKYHHPR 124
              5789********************96 PP
3zf-CCCH37.63.6e-12148172226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ++++C++f+rtG+Ck+G++C+++H+
   488738 148 GEKECSYFMRTGQCKFGSTCRYHHP 172
              7899********************9 PP
4zf-CCCH41.22.6e-13302327227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               +++C++f+rtG Ck+G++C+F+H++
   488738 302 EQPECQYFMRTGDCKFGSSCRFHHPM 327
              5799********************95 PP
5zf-CCCH33.76.1e-11349371426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              ++C +fa+ G+Ck+G+ CkF H+
   488738 349 VPCTHFAQHGICKFGPACKFDHS 371
              79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1925179IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-55178IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-105378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27797125IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-697124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699124IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1099124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5102124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394146174IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10148172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798300328IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6300327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5348373IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8348371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4350371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MERYGGAGED ESRSDPSHEW SAPGTETGIE ASMWRLGLRG AGGGGESFPE RPDEPDCIYF  60
LRTGVCGYGS RCRFNHPRNR APVLGSLRTE AGEFPERMGQ PVCQHFMRTG TCKFGASCKY  120
HHPRQGGGGG DSVTPVSLNY MGFPLRPGEK ECSYFMRTGQ CKFGSTCRYH HPVPPGVQAA  180
SQQQQQLSAG PTMYPSLQSQ SVPSSQQYGV VLARPQILPG SYVQSPYGYG QMVIPPGMVP  240
YSGWNPYQAS VSAIPSPGTQ PSIGTSSVYG ITPLSPSAPA YQSGPSSTGV TNKEQTFPQR  300
PEQPECQYFM RTGDCKFGSS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC  360
KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPLGSSS LGTLAPSSSS SSSDQRTELL  420
SSSSIEPITT ATSGSETVAA GVSSSSSMTS GVSHPEPAET NKGDSASIEA KTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap488738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301750.0AK230175.1 Arabidopsis thaliana mRNA for zinc finger like protein, complete cds, clone: RAFL22-89-O03.
GenBankBT0108860.0BT010886.1 Arabidopsis thaliana At5g18550 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878766.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLD7LXW50.0D7LXW5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1872__AT5G18550.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]