PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

48904

Common Name

SELMODRAFT_48904

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

AP2

Protein Properties

Length: 137aa MW: 15459.3 Da PI: 8.6486

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48904	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.4	4e-14	75	124	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f t+e+Aa+a++ a+ + + 48904 75 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFNTEEDAARAYDLAAVRCN 124 89******.7**5553..2.26*******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	10.692	1	33	IPR001471	AP2/ERF domain
SMART	SM00380	5.9E-4	3	39	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-7	4	34	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-9	4	34	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-18	75	135	IPR016177	DNA-binding domain
CDD	cd00018	5.75E-25	75	135	No hit	No description
Pfam	PF00847	1.1E-9	75	124	IPR001471	AP2/ERF domain
SMART	SM00380	8.7E-28	76	137	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.778	76	133	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.6E-17	76	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	115	135	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
LFPGGFDTAH AAARAYDKAA IKFRGMDADI NFNLSDYQEE IKQASYTFFS LALLSREEFV 60 HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFNTEE DAARAYDLAA 120 VRCNGGEAVT NFDPSNY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:20713616, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269\|PubMed:27181944, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024527373.1	5e-76	AP2-like ethylene-responsive transcription factor AIL5 isoform X1
Refseq	XP_024528245.1	5e-76	AP2-like ethylene-responsive transcription factor AIL5 isoform X1
Swissprot	Q2TQ34	2e-62	AP21_ORYSJ; APETALA2-like protein 1
TrEMBL	D8QQ63	3e-97	D8QQ63_SELML; Uncharacterized protein (Fragment)
STRING	EFJ38406	4e-98	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP497	17	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	1e-61	AP2 family protein

Link Out ? help Back to Top
Phytozome	48904
Entrez Gene	9662927

Publications ? help Back to Top
Fu FF,Xue HW Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator. Plant Physiol., 2010. 154(2): p. 927-38 [PMID:20713616] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Sekhar S, et al. Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars. J. Plant Physiol., 2015. 179: p. 21-34 [PMID:25817414] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Zhang H,Lu Y,Zhao Y,Zhou DX OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression. Plant Sci., 2016. 248: p. 28-36 [PMID:27181944] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]