PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

489189

Common Name

ARALYDRAFT_489189

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 244aa MW: 26078 Da PI: 10.1466

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
489189	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.3e-38	29	134	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg................. 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s +s+ s + 489189 29 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGTSSTSLSssldhkptsllggsspf 131 79*************************************************************9999977722222222221111122333334455543333 PP TCP 89 ..k 89 489189 132 ilG 134 330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-34	34	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSINNNNNND GVMISSNGAL IEQPSSVVVK KPPAKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST ASVSIRGTSS TSLSSSLDHK 120 PTSLLGGSSP FILGKRVRAD EDNNNHNSGG KDETFTTTPA GFWAVPARPD FGQVWSFTGA 180 PQEMFLQQHH QQPLFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG GSPGSGRREE 240 DPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	489189

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	0.0	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872048.1	1e-180	transcription factor TCP7
Swissprot	Q9FMX2	1e-144	TCP7_ARATH; Transcription factor TCP7
TrEMBL	D7M1Q2	1e-179	D7M1Q2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__2323__AT5G23280.1	1e-179	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-107	TCP family protein

Link Out ? help Back to Top
Phytozome	489189
Entrez Gene	9310190