PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489614
Common NameARALYDRAFT_489614
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24441.8 Da    PI: 9.655
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489614genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.22.9e-202371350
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
            ++++ ++++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  489614 23 SSSTAKKTTNLSMREETMFKKAFELSTLCDIEVCVIYYGRDGELiKTWP 71
            6788899999********************************9856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-13272IPR002100Transcription factor, MADS-box
CDDcd002665.95E-211698No hitNo description
PROSITE profilePS5006610.752573IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-1526107IPR002100Transcription factor, MADS-box
PfamPF003195.3E-132666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTKKKTKLS LRNQTCFKKS SLSSSTAKKT TNLSMREETM FKKAFELSTL CDIEVCVIYY  60
GRDGELIKTW PEDQSKVRDM AERFTKLNDR ERRKKSTNLS LLLRKKILDD NKLSEKVLEM  120
KDSLESGIRV LQDKLKLLQP ENQIELGQSR VVSSTTNPLS SPSLIEDHHQ QQSPLMSNTE  180
QELSTSSLSQ HQSKFSVFLY NHDNGSFCQL PNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap489614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937630.0AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580.
GenBankAC0074780.0AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence.
GenBankAY1412260.0AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds.
GenBankBT0252910.0BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4469910.0DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds.
GenBankDQ6533120.0DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874407.21e-153agamous-like MADS-box protein AGL53
SwissprotQ7X9H91e-110AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLD7M6991e-153D7M699_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__2748__AT5G27944.11e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-105AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]