PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489617
Common NameARALYDRAFT_489617
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31733.9 Da    PI: 8.087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489617genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.5e-202371350
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
            ++++ ++++ +s R  +++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  489617 23 SSSTAKKTTNLSMREDTMFKKAFELSTLCDIEVCVIYYGRDGELiKTWP 71
            6788889999********************************9856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-14272IPR002100Transcription factor, MADS-box
CDDcd002664.14E-221698No hitNo description
PROSITE profilePS5006610.822573IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-1526107IPR002100Transcription factor, MADS-box
PfamPF003197.4E-132666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSTKKKTKLS LRNQTRFKKS SLSSSTAKKT TNLSMREDTM FKKAFELSTL CDIEVCVIYY  60
GRDGELIKTW PEDKSKVRDM AERFTKLNDR ERRKKSTNLS LLLRKKILDD DKLSEKVLEM  120
KDSLESGLRV LQDKLLLLQP ENQTELGQSR VVSSTTNPLS SPEDHHQQQW TESLVNGVSN  180
TEQDLSMSSL SQHQSKFSIF LYNHDNGSFC QLPDSVSSFD QSALLGAQGS DLRSNFDHLP  240
MVFPPQMQTQ TPLVHFDQFA PWNQAPSFTD PMMFSYN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap489617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412170.0AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF15P110.0AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874408.20.0agamous-like MADS-box protein AGL53 isoform X1
SwissprotQ7X9N21e-155AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLD7M6A00.0D7M6A0_ARALL; MADS-box family protein
STRINGfgenesh2_kg.6__2751__AT5G27070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-130AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]