PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489637
Common NameARALYDRAFT_489637
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 427aa    MW: 46950.4 Da    PI: 4.6412
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489637genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.66.9e-37126224298
  DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
             lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke+ f+++hdq +f++s+kiW++
  489637 126 LFQRLWTDEDEIELLRGFLDYiTSHRGNSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVFFKSPHDQATFDISRKIWNQ 224
             79*******************9999**999999****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.1E-34127223IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASDQRDTDF SVESLDLEED GGGGGGRGGG ETESDEDVVI PEPNEAEDDD HDHDPDPEYE  60
DLNSPSMISA ISTAPVAKST SGTVTVALPA GSAVPVSSIP SDSDQKWHRM TEIVHQKPPI  120
DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGNSSHPPDT APFYEQIKSK LQLDFNKNQL  180
VEKLRRLKKK YRNVMSKFSS GKEVFFKSPH DQATFDISRK IWNQTGKIIG FEDNNVMDFE  240
ETNHVNNTNG SSSFNVSIVN VDVDSENGLE KKVTISRKRS RSRIGKIDED KPVIAPSEGL  300
MPNAVNLNEN VAVAGDFGDG RNLGGMIEET VKNCVSPMIK EMMNGTTGMM MAAMGGFPGG  360
GAHALGVLSP MLMLSMNLGF GGKGVGDERW RRQQILELEV YSRRLELVQE QIRATVNELK  420
TMPNGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap489637
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076270.0AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876929.10.0probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLD7M6T00.0D7M6T0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2771__AT5G28040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]