PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489689
Common NameARALYDRAFT_489689
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 139aa    MW: 15602.1 Da    PI: 10.4964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489689genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-172372255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  489689 23 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYKTAVAAARAYDTAVFYLRG 72
            8******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-282282No hitNo description
SuperFamilySSF541712.75E-212381IPR016177DNA-binding domain
PfamPF008471.1E-102372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302381IPR001471AP2/ERF domain
PROSITE profilePS5103222.3662380IPR001471AP2/ERF domain
SMARTSM003808.7E-382386IPR001471AP2/ERF domain
PRINTSPR003671.3E-112435IPR001471AP2/ERF domain
PRINTSPR003671.3E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVKEGMVMNE KPKRNLMSPN EKRYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYKTAVAAA  60
RAYDTAVFYL RGPSARLNFP EQVLQDGNGG EGVGGDMSAT LIRQKAAEVG ARVDAELRLE  120
NKMVEKLDMN KLPEAYGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-172291470ATERF1
3gcc_A8e-172291470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0731661e-163AB073166.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F15N16.
GenBankAY5608691e-163AY560869.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g06746) mRNA, complete cds.
GenBankBT0246891e-163BT024689.1 Arabidopsis thaliana At4g06746 mRNA, complete cds.
GenBankCP0026871e-163CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874479.22e-96ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M34e-82RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLD7M7M22e-95D7M7M2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2823__AT4G06746.14e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.14e-73related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]