PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489868
Common NameARALYDRAFT_489868
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family DBB
Protein Properties Length: 163aa    MW: 17772.9 Da    PI: 5.2432
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489868genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.9e-06445539
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
               C+ +e+ e++  C +++  lC+ C  + H+        H+v
    489868  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHRV 45
              7*****************************767888884444 PP
2zf-B_box28.14.3e-096097338
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
              ++ C+ ++e +  +fC +++ llC+dC  ++H  ++H+
    489868 60 APLCDICQERKGYFFCLEDRALLCNDCDGAIHtcNSHQ 97
              689******99********************9434487 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000211.45E-4347No hitNo description
SMARTSM003361.8E-5447IPR000315B-box-type zinc finger
SMARTSM003364.6E-1258101IPR000315B-box-type zinc finger
PROSITE profilePS501199.24358101IPR000315B-box-type zinc finger
PfamPF006433.8E-76097IPR000315B-box-type zinc finger
CDDcd000215.21E-761101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALHKD ASSATTASGA  60
PLCDICQERK GYFFCLEDRA LLCNDCDGAI HTCNSHQRFL LSGVQVSDQS LTENSECSTS  120
FGSETCQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL RP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap489868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229160.0AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874613.11e-116B-box zinc finger protein 23
RefseqXP_020878462.11e-116B-box zinc finger protein 23
SwissprotO826171e-103BBX23_ARATH; B-box zinc finger protein 23
TrEMBLD7LY291e-115D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.6__3002__AT4G10240.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.11e-106DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]