PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490512
Common NameARALYDRAFT_490512
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 395aa    MW: 45847.5 Da    PI: 9.9032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490512genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-174596148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g WT eEd++l +av+++  ++Wk+Ia++++    k+R + qc++rw+k+l
           490512 45 KGGWTSEEDKILTKAVQMYEEKNWKKIAECLPkrkeKRRNDVQCQHRWLKVL 96
                     688**********************************************986 PP
2Myb_DNA-binding44.53.6e-14102151148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W + Ed+ll ++vk++  +   +W++Ia+ ++ gR +kqc++rw+++l
           490512 102 KGAWRKYEDDLLSELVKEYMEKdkpQWSKIAKQLP-GRIGKQCRERWHNHL 151
                      799********************************.*************97 PP
3Myb_DNA-binding538e-17157199145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+++lv+a +++G++ W+ Ia+ +  gRt++++k++w+
           490512 157 KTPWTREEELILVQAQREHGNK-WAEIAKLLS-GRTENNIKNHWN 199
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6624096IPR017930Myb domain
SMARTSM007171.3E-144498IPR001005SANT/Myb domain
SuperFamilySSF466891.49E-1646120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-1947108IPR009057Homeodomain-like
CDDcd001671.42E-104896No hitNo description
PfamPF139211.9E-1548113No hitNo description
PROSITE profilePS5129425.46697155IPR017930Myb domain
SMARTSM007172.3E-14101153IPR001005SANT/Myb domain
CDDcd001671.09E-9104151No hitNo description
Gene3DG3DSA:1.10.10.604.9E-23109159IPR009057Homeodomain-like
SuperFamilySSF466893.29E-27134209IPR009057Homeodomain-like
PROSITE profilePS5129420.572156206IPR017930Myb domain
SMARTSM007175.1E-15156204IPR001005SANT/Myb domain
PfamPF002491.0E-14157199IPR001005SANT/Myb domain
CDDcd001672.20E-10159199No hitNo description
Gene3DG3DSA:1.10.10.603.6E-20160207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTEPFDLNRS ESESDNNNNV IPTFAIDNSS QGYRRVSGPT RRSTKGGWTS EEDKILTKAV  60
QMYEEKNWKK IAECLPKRKE KRRNDVQCQH RWLKVLHPDL NKGAWRKYED DLLSELVKEY  120
MEKDKPQWSK IAKQLPGRIG KQCRERWHNH LNPTIRKTPW TREEELILVQ AQREHGNKWA  180
EIAKLLSGRT ENNIKNHWNC SVKKRLKQFP SNLFSGVINS CRHEYNFFNQ SNTMAESCIT  240
FQIKEAEKSP QRDSLELTLG LMNWRNTPSS TSSLRGEESV SSSVESDWSR LNVSESVETP  300
QSSNNDNVCV KEVKEMQERL RMAASTFNTP SIISKRSSPA SGLKRLRQKD DTPFQIDARS  360
HMSSEEKQSI SSKYRRNTCS GSKPLERRLD FDFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-53482064159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-53482064159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap490512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878065.10.0transcription factor MYB3R-2 isoform X1
SwissprotQ9SPN30.0MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLD7M5M80.0D7M5M8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__3646__AT4G00540.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.20.0myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]