PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

490960

Common Name

ARALYDRAFT_490960

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25197.1 Da PI: 4.862

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
490960	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.4e-20	57	110	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ 490960 57 KRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 110 4589************************************************95 PP
2	HD-ZIP_I/II	124.7	4.1e-40	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+l++eqv++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+ev +L+e+l 490960 56 RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLY 146 8***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.86	51	111	IPR001356	Homeobox domain
SMART	SM00389	1.0E-19	54	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-18	56	121	IPR009057	Homeodomain-like
CDD	cd00086	2.92E-16	56	112	No hit	No description
Pfam	PF00046	1.6E-17	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.9E-21	58	118	IPR009057	Homeodomain-like
PRINTS	PR00031	9.3E-6	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.3E-6	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MNHTVDDQNM AFISQLYPDV YTQLVPQPGE VKQPKRRRKK SKGALASGDG SNSLFRKRKL 60 TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRARWKN KRLEEEYNKL 120 KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE VGSSNSPISS SVSVEANEAP 180 FFGDYKVGDD GDDYDNLFYP VPENSYIDEA EWMNLYI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	58	RKKSKGALASGDGSNSLFRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	490960

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161589	1e-139	AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBank	AL161590	1e-139	AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBank	CP002687	1e-139	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z99708	1e-139	Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866994.1	1e-160	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-141	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	D7MBE6	1e-159	D7MBE6_ARALL; Homeobox-leucine zipper protein ATHB-40
STRING	fgenesh2_kg.7__393__AT4G36740.1	1e-160	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-120	homeobox protein 40

Link Out ? help Back to Top
Phytozome	490960
Entrez Gene	9305097

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]