PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490963
Common NameARALYDRAFT_490963
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 487aa    MW: 54035.1 Da    PI: 4.9636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490963genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.32.2e-1021234852374
    GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
             +e L++++++v+s++l+laq +L+rl+++ +sp+g+++qR+a+yf+eAL + l++     ++  p + +s+++ ++++ a k +s +sPi+ fsh+taNqaIl
  490963 123 IEDLIRVVDCVESDELQLAQVVLSRLNQRlRSPAGRALQRAAFYFKEALGSLLTG-----SNRNPIRLSSWSDIVQRIRAIKEYSGISPIPLFSHFTANQAIL 220
             678*************************99*************************.....88899999*********************************** PP

    GRAS 104 eavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
             ++++++     vH++Dfdi+ G+Q+++L++++++++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++f+++++++k++e+l+++++r+ +gE ++
  490963 221 DSLSSQsssPFVHVVDFDIGFGGQYASLMREITEKSVSGGFLRVTAVVAEE--CAVETRLVKENLSQFATEMKIRFQIEFVLMKTFEMLSFKAIRFVEGERTV 321
             ***99977789**************************************66..9************************************************* PP

    GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
             V ++ +++r +       s ++++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p+ +  ++ vE+++l+++i+ +v ++ +
  490963 322 VLISPAIFRRV-------SGISDFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAAD 417
             *********98.......33557*******************76677899**************************************************999 PP

    GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             +   rh+  ++Wre++ +aG++p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
  490963 418 R---RHTGEMTWREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485
             9...9*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.91196465IPR005202Transcription factor GRAS
PfamPF035147.6E-100123485IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKIPASSPQD TTNNNNTNST DSNHLSMDEH VMRSMDWDSI MKELELDDDS APNSLKTGFT  60
TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG QNQTTGYGFN SLDSVDNGGF  120
DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRAL QRAAFYFKEA LGSLLTGSNR  180
NPIRLSSWSD IVQRIRAIKE YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFDIG  240
FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLSQFATEM KIRFQIEFVL  300
MKTFEMLSFK AIRFVEGERT VVLISPAIFR RVSGISDFVN NLRRVSPKVV VFVDSEGWTE  360
IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE AFVLRPKISA AVETAADRRH  420
TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA  480
TSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2812848425378Protein SCARECROW
5b3h_A2e-2812848424377Protein SCARECROW
5b3h_D2e-2812848424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap490963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872480.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLD7MBE90.0D7MBE9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__396__AT4G36710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]