PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 492289
Common NameARALYDRAFT_492289
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 143aa    MW: 16001.3 Da    PI: 8.4974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
492289genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12453455
            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
             h+e+E++RR+++ s +  Lr+ll   +   ++K s a+ +  Av+YI +Lq
  492289  4 VHKEVEKQRRQEMASLYTSLRSLLLLEF--IQGKRSTADQVNGAVNYIEYLQ 53
            6*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.757152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-11466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-10466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-9557No hitNo description
SMARTSM003532.7E-4658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEKVHKEVEK QRRQEMASLY TSLRSLLLLE FIQGKRSTAD QVNGAVNYIE YLQRNIKDIS  60
SKRDDLVLLS GRSFGSSNEQ DWNQISNHVV IIRPCLVGIE IVFSVLQTPF SSVLKVIREH  120
GLCVLGCISS SVNDKTHSHS TG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap492289
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936991e-145AB493699.1 Arabidopsis thaliana At4g25400 mRNA for hypothetical protein, partial cds, clone: RAAt4g25400.
GenBankAY1426211e-145AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873857.12e-94LOW QUALITY PROTEIN: transcription factor bHLH118
SwissprotQ9STJ74e-77BH118_ARATH; Transcription factor bHLH118
TrEMBLD7MG093e-99D7MG09_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__1722__AT4G25400.11e-100(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-71bHLH family protein