PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 49296
Common NameSELMODRAFT_49296, SELMODRAFT_49297
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 61aa    MW: 6785.77 Da    PI: 10.481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
49296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v+++G+g W++I r          R+  ++k++w+++
            49296  5 KQKWTAEEECALRAGVEKYGPGKWRAIQRDPKfgpalVARSNVDLKDKWRNL 56
                     79****************************9999***9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.029161IPR017930Myb domain
SuperFamilySSF466891.0E-16256IPR009057Homeodomain-like
SMARTSM007173.5E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-16556IPR009057Homeodomain-like
PfamPF002491.3E-9556IPR001005SANT/Myb domain
CDDcd116601.63E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGAPKQKWTA EEECALRAGV EKYGPGKWRA IQRDPKFGPA LVARSNVDLK DKWRNLSVSS  60
G
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983713.25e-38telomere repeat-binding factor 1
RefseqXP_002989044.25e-38telomere repeat-binding factor 1
RefseqXP_024518640.15e-38telomere repeat-binding factor 1
SwissprotQ8W1194e-27SMH4_MAIZE; Single myb histone 4
TrEMBLD8SKD85e-37D8SKD8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ098389e-38(Selaginella moellendorffii)
STRINGEFJ152099e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-26telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]