PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493070
Common NameAPRR2, ARALYDRAFT_493070
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 534aa    MW: 59138.7 Da    PI: 6.4716
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493070genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.1e-26295348256
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
              ++++WtpeLH++Fv+aveqL G ++A+P++ilelmkv  Lt+++v+SHLQk+R +
   493070 295 KKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVGTLTRHNVASHLQKFRQH 348
              689*****************.********************************76 PP
2Response_reg26.72.9e-104013315109
                   HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   r+ le+ +y +v++++d +eal  + +++  +++ ++ ++    +  e +k ++ +++ lp i++++    +++ +++ +Ga +fl Kp +pe+l +
        493070  40 RSKLESMDY-IVTTFTDETEALSAVVKNResFHVAIVEVNTRAEN--ESFKFLEGAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKN 133
                   5668999**.*************99666667******99987765..77888889999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.5725139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-638133IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.99E-1038140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-1239166No hitNo description
CDDcd001564.78E-643138No hitNo description
PROSITE profilePS5129416.667291350IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-24292350IPR009057Homeodomain-like
SuperFamilySSF466898.36E-19293351IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23295348IPR006447Myb domain, plants
PfamPF002497.1E-8297345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLHGGDSD RDGSSAAETR SKLESMDYIV TTFTDETEAL  60
SAVVKNRESF HVAIVEVNTR AENESFKFLE GAKDVLPTIM ISTDHCITTT MKCIALGAVE  120
FLQKPLSPEK LKNIWQHVVH KAFNDGGTNV SVSLKPVKES VVSMPHLDTD MTSDEKDPAP  180
STPQLKQISR LLGDCQENIN FSMENVNSSI EKDNIEDQDI GESKSVDTTN HKLDDDKVVV  240
KEERGDSEKE EEGETGNLIS EKTDSVDIHK KEDETKPINK SSGIKNVSGN KTSRKKVDWT  300
PELHKKFVQA VEQLGVDQAI PSRILELMKV GTLTRHNVAS HLQKFRQHRK NILPKDDHNH  360
RWIQSRENHR PNQHNYNGFQ QQHRPVMAYP VWGLPGVYPP GAIPPLWPPP LQSIGQPPPW  420
HWKPPYPTVS GNAWGCPVGP PVTGSYITPS NTTAGGFQYS NGAETGFKIM PATQPDEEMI  480
DQVVKEAISK PWLPLPLGLK PPSADSVLAE LSRQGISAVP SSSCLINGSH RLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-15294352563ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874565.10.0two-component response regulator-like APRR2
RefseqXP_020874566.10.0two-component response regulator-like APRR2
RefseqXP_020874567.10.0two-component response regulator-like APRR2
RefseqXP_020874568.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLD7MCX70.0D7MCX7_ARALL; Pseudo-response regulator 2
STRINGfgenesh2_kg.7__2503__AT4G18020.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]